snrpd2 protein (Ictalurus punctatus) - STRING interaction network

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Score

snrpd2

Small nuclear ribonucleoprotein Sm D2. (118 aa)

Predicted Functional Partners:

snrpd3

0.999

snrpd1

0.999

snrpe

0.999

snrpg

0.999

lsm2

0.999

snrpf

0.999

LOC108272150

0.999

lsm7

0.998

lsm6

0.996

snrpc

0.995

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108272150	lsm2	ENSIPUP00000036687	ENSIPUP00000015483	Small nuclear ribonucleoprotein-associated protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.982
LOC108272150	lsm6	ENSIPUP00000036687	ENSIPUP00000006504	Small nuclear ribonucleoprotein-associated protein.	U6 snRNA-associated Sm-like protein LSm6.	0.851
LOC108272150	lsm7	ENSIPUP00000036687	ENSIPUP00000036921	Small nuclear ribonucleoprotein-associated protein.	U6 snRNA-associated Sm-like protein LSm7.	0.851
LOC108272150	snrpc	ENSIPUP00000036687	ENSIPUP00000037124	Small nuclear ribonucleoprotein-associated protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.995
LOC108272150	snrpd1	ENSIPUP00000036687	ENSIPUP00000005121	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
LOC108272150	snrpd2	ENSIPUP00000036687	ENSIPUP00000001479	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein Sm D2.	0.999
LOC108272150	snrpd3	ENSIPUP00000036687	ENSIPUP00000004407	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein Sm D3.	0.999
LOC108272150	snrpe	ENSIPUP00000036687	ENSIPUP00000006614	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
LOC108272150	snrpf	ENSIPUP00000036687	ENSIPUP00000028083	Small nuclear ribonucleoprotein-associated protein.	Small Nuclear ribonucleoprotein F.	0.999
LOC108272150	snrpg	ENSIPUP00000036687	ENSIPUP00000010065	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein G.	0.999
lsm2	LOC108272150	ENSIPUP00000015483	ENSIPUP00000036687	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein-associated protein.	0.982
lsm2	lsm6	ENSIPUP00000015483	ENSIPUP00000006504	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm6.	0.999
lsm2	lsm7	ENSIPUP00000015483	ENSIPUP00000036921	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm7.	0.999
lsm2	snrpc	ENSIPUP00000015483	ENSIPUP00000037124	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.882
lsm2	snrpd1	ENSIPUP00000015483	ENSIPUP00000005121	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.972
lsm2	snrpd2	ENSIPUP00000015483	ENSIPUP00000001479	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.999
lsm2	snrpd3	ENSIPUP00000015483	ENSIPUP00000004407	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D3.	0.969
lsm2	snrpe	ENSIPUP00000015483	ENSIPUP00000006614	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
lsm2	snrpf	ENSIPUP00000015483	ENSIPUP00000028083	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small Nuclear ribonucleoprotein F.	0.997
lsm2	snrpg	ENSIPUP00000015483	ENSIPUP00000010065	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.973