Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
chrac1Chromatin accessibility complex protein 1. (113 aa)    
Predicted Functional Partners:
pole3
DNA polymerase epsilon subunit 3.
    
 0.998
baz1a
Bromodomain adjacent to zinc finger domain protein 1A isoform X5.
   
 0.996
smarca5
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5.
   
 0.924
LOC108260009
Putative global transcription activator SNF2L1.
   
 0.924
nfyb
Nuclear transcription factor Y subunit beta isoform X1.
   
 0.922
baz1b
Tyrosine-protein kinase BAZ1B isoform X1.
   
 0.883
cb064
Uncharacterized protein c2orf64-like protein.
      
 0.853
LOC108265435
Nuclear transcription factor Y subunit alpha-like isoform X4.
    
 0.812
ENSIPUP00000012074
annotation not available
    
 0.812
LOC108254944
Nuclear transcription factor Y subunit alpha-like isoform X3.
    
 0.812
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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