Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
csdc2Cold shock domain-containing protein C2. (154 aa)    
Predicted Functional Partners:
LOC108277698
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like.
    
   0.641
LOC108260120
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform.
    
   0.641
snrpf
Small Nuclear ribonucleoprotein F.
   
  0.611
snrpg
Small nuclear ribonucleoprotein G.
   
  0.584
dhx9
LOW QUALITY PROTEIN: ATP-dependent RNA helicase A.
   
 0.524
rps11
40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.
   
 
 0.512
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.508
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.504
eif4a3
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
  
 0.497
rpl23a
60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
   
   0.497
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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