Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tmem51Transmembrane protein 51. (239 aa)    
Predicted Functional Partners:
ndufaf6
NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6 isoform X1.
      
 0.622
rab28
Ras-related protein Rab-28 isoform X1.
    
 
 0.532
cdc42ep3
CDC42 effector protein 3.
      
 0.501
LOC108261162
Ubiquitin-conjugating enzyme E2 K-like; Belongs to the ubiquitin-conjugating enzyme family.
      
 0.478
ube2k
Ubiquitin-conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family.
      
 0.478
tmem86a
Lysoplasmalogenase-like protein TMEM86A.
      
 0.475
nbeal2
Neurobeachin-like protein 2.
      
 0.463
nbeal1
Neurobeachin-like protein 1.
      
 0.463
sub1
Activated RNA polymerase II transcriptional coactivator p15.
      
 0.451
LOC108276987
Activated RNA polymerase II transcriptional coactivator p15-like.
      
 0.451
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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