Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC108264553Peptidoglycan recognition protein 1-like. (187 aa)    
Predicted Functional Partners:
mitd1
MIT domain-containing protein 1.
      
 0.693
akap17a
A-kinase anchor protein 17A.
      
 0.629
ncf1
Neutrophil cytosol factor 1.
      
 0.596
LOC108272820
Traf2 and NCK-interacting protein kinase-like.
      
 0.575
irak3
Interleukin-1 receptor-associated kinase 3.
   
 
 0.569
acsm3
Acyl-coenzyme A synthetase ACSM3, mitochondrial isoform X1.
      
 0.541
ENSIPUP00000006203
annotation not available
    
 0.490
ctso
Cathepsin O; Belongs to the peptidase C1 family.
     
 0.486
mrpl30
39S ribosomal protein L30, mitochondrial.
      
 0.478
ids
Iduronate 2-sulfatase.
      
 0.475
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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