Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ctdsp2Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2. (258 aa)    
Predicted Functional Partners:
gtf2f1
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.620
ENSIPUP00000007029
Myelin basic protein b.
    
   0.609
cdca3
Cell division cycle-associated protein 3 isoform X2.
    
   0.609
rest
RE1-silencing transcription factor.
    
 
 0.609
lpin2
Phosphatidate phosphatase LPIN2 isoform X1.
    
 0.607
ENSIPUP00000010256
annotation not available
    
 0.607
LOC108275291
Phosphatidate phosphatase LPIN1-like.
    
 0.607
lpin1
Phosphatidate phosphatase LPIN1 isoform X1.
    
 0.607
LOC108271928
Phosphatidate phosphatase LPIN2-like isoform X1.
    
 0.607
polr2g
DNA-directed RNA polymerase II subunit RPB7.
    
 0.597
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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