STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
adamts14A disintegrin and metalloproteinase with thrombospondin motifs 14. (1142 aa)    
Predicted Functional Partners:
ccbe1
Collagen and calcium-binding EGF domain-containing protein 1.
      
 0.700
parp2
Poly [ADP-ribose] polymerase.
   
  
 0.624
svep1
Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 isoform X1.
   
 0.605
pald1
Paladin.
   
  
 0.583
LOC108274127
Syntaxin-4-like; Belongs to the syntaxin family.
      
 0.520
vegfc
Vascular endothelial growth factor C isoform X1; Belongs to the PDGF/VEGF growth factor family.
   
 
 0.512
stx1a
syntaxin-1A isoform X1.
      
 0.511
stx1b
syntaxin-1B; Belongs to the syntaxin family.
      
 0.511
LOC108273671
Zinc finger protein 646-like.
     
 0.496
LOC108280221
Derriere protein-like.
      
 0.484
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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