Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108280269Period circadian protein homolog 2-like. (404 aa)    
Predicted Functional Partners:
LOC108269229
Cryptochrome-2-like.
   
 0.900
LOC108265656
Cryptochrome-1-like.
   
 0.882
timeless
Protein timeless homolog.
   
 0.860
LOC108273445
Casein kinase I-like isoform X2; Belongs to the protein kinase superfamily.
    
 0.795
LOC108274016
Casein kinase I isoform delta-B; Belongs to the protein kinase superfamily.
    
 0.795
LOC108259482
Casein kinase I isoform X2; Belongs to the protein kinase superfamily.
    
 0.795
LOC108279922
Cryptochrome-1-like.
   
 0.795
nr1d1
Nuclear receptor subfamily 1 group D member 1 isoform X1.
   
 
 0.788
LOC108268310
Deoxyribodipyrimidine photo-lyase-like.
   
 0.767
cry1
Cryptochrome-1.
   
 0.756
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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