LOC108258545 protein (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC108258545

Protein ELFN1-like. (796 aa)

Predicted Functional Partners:

UNC79

0.703

trip11

0.638

mycbp2

0.615

ppl

0.552

ENSIPUP00000019732

0.513

ENSIPUP00000019829

0.513

LOC108261082

0.513

socs6

0.510

lrit3

0.497

LOC108257787

0.477

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000019732	ENSIPUP00000019829	ENSIPUP00000019732	ENSIPUP00000019829	annotation not available	annotation not available	0.617
ENSIPUP00000019732	LOC108258545	ENSIPUP00000019732	ENSIPUP00000001563	annotation not available	Protein ELFN1-like.	0.513
ENSIPUP00000019732	LOC108261082	ENSIPUP00000019732	ENSIPUP00000029029	annotation not available	RANBP2-like and GRIP domain-containing protein 5/6.	0.617
ENSIPUP00000019732	lrit3	ENSIPUP00000019732	ENSIPUP00000005040	annotation not available	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3.	0.520
ENSIPUP00000019829	ENSIPUP00000019732	ENSIPUP00000019829	ENSIPUP00000019732	annotation not available	annotation not available	0.617
ENSIPUP00000019829	LOC108258545	ENSIPUP00000019829	ENSIPUP00000001563	annotation not available	Protein ELFN1-like.	0.513
ENSIPUP00000019829	LOC108261082	ENSIPUP00000019829	ENSIPUP00000029029	annotation not available	RANBP2-like and GRIP domain-containing protein 5/6.	0.617
ENSIPUP00000019829	lrit3	ENSIPUP00000019829	ENSIPUP00000005040	annotation not available	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3.	0.520
LOC108257787	LOC108258545	ENSIPUP00000034938	ENSIPUP00000001563	Transcription factor E2F6-like isoform X2.	Protein ELFN1-like.	0.477
LOC108258545	ENSIPUP00000019732	ENSIPUP00000001563	ENSIPUP00000019732	Protein ELFN1-like.	annotation not available	0.513
LOC108258545	ENSIPUP00000019829	ENSIPUP00000001563	ENSIPUP00000019829	Protein ELFN1-like.	annotation not available	0.513
LOC108258545	LOC108257787	ENSIPUP00000001563	ENSIPUP00000034938	Protein ELFN1-like.	Transcription factor E2F6-like isoform X2.	0.477
LOC108258545	LOC108261082	ENSIPUP00000001563	ENSIPUP00000029029	Protein ELFN1-like.	RANBP2-like and GRIP domain-containing protein 5/6.	0.513
LOC108258545	UNC79	ENSIPUP00000001563	ENSIPUP00000010538	Protein ELFN1-like.	Protein unc-79 homolog isoform X3.	0.703
LOC108258545	lrit3	ENSIPUP00000001563	ENSIPUP00000005040	Protein ELFN1-like.	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3.	0.497
LOC108258545	mycbp2	ENSIPUP00000001563	ENSIPUP00000033458	Protein ELFN1-like.	E3 ubiquitin-protein ligase MYCBP2 isoform X10.	0.615
LOC108258545	ppl	ENSIPUP00000001563	ENSIPUP00000022544	Protein ELFN1-like.	Periplakin.	0.552
LOC108258545	socs6	ENSIPUP00000001563	ENSIPUP00000011283	Protein ELFN1-like.	Suppressor of cytokine signaling 6 isoform X1.	0.510
LOC108258545	trip11	ENSIPUP00000001563	ENSIPUP00000002629	Protein ELFN1-like.	Thyroid receptor-interacting protein 11.	0.638
LOC108261082	ENSIPUP00000019732	ENSIPUP00000029029	ENSIPUP00000019732	RANBP2-like and GRIP domain-containing protein 5/6.	annotation not available	0.617