Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ciartCircadian-associated transcriptional repressor. (366 aa)    
Predicted Functional Partners:
bhlhe41
Class E basic helix-loop-helix protein 41.
    
 
 0.684
mtmr11
Myotubularin-related protein 11 isoform X1.
      
 0.616
zadh2
Zinc-binding alcohol dehydrogenase domain-containing protein 2.
      
 0.613
miga2
Protein FAM73B.
      
 0.605
pdzk1
Na(+)/H(+) exchange regulatory cofactor NHE-RF3.
      
 0.599
crba1
Beta-crystallin A3; Belongs to the beta/gamma-crystallin family.
      
 0.599
LOC108260234
Na(+)/H(+) exchange regulatory cofactor NHE-RF3-like.
      
 0.599
bhlhe40
Class E Basic helix-loop-helix protein 40.
    
 
 0.599
marf1
Meiosis arrest female protein 1.
      
 0.598
cfap43
Cilia- and flagella-associated protein 43 isoform X1.
      
 0.598
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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