Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sptssaSmall subunit of serine palmitoyltransferase a. (68 aa)    
Predicted Functional Partners:
sptlc1
Serine palmitoyltransferase 1.
    
 0.997
sptlc2
Serine palmitoyltransferase 2.
    
 0.981
ormdl1
ORM1-like protein; Negative regulator of sphingolipid synthesis.
    
 
 0.935
sptssb
Serine palmitoyltransferase small subunit B isoform X2.
  
  
0.882
LOC108273759
ORM1-like protein; Negative regulator of sphingolipid synthesis.
    
 
 0.764
LOC108276395
ORM1-like protein; Negative regulator of sphingolipid synthesis.
    
 
 0.764
ugcg
Ceramide glucosyltransferase isoform X1.
      
 0.637
c12h6orf136
Uncharacterized protein C6orf136 homolog.
      
 0.636
tmem208
Transmembrane protein 208.
      
 0.634
eapp
E2F-associated phosphoprotein.
      
 0.629
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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