Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
atox1Copper transport protein ATOX1. (67 aa)    
Predicted Functional Partners:
atp7a
Copper-transporting ATPase 1.
    
 0.992
LOC108273321
Copper-transporting ATPase 2-like isoform X1.
    
 0.992
COX17
Cytochrome c oxidase copper chaperone.
   
 
 0.949
ccs
Copper chaperone for superoxide dismutase.
    
 
 0.920
Ccs
Copper chaperone for superoxide dismutase.
    
 
 0.920
ndufa5
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5.
   
 
 0.885
pdzd11
PDZ domain-containing protein 11.
     
 0.849
mrpl24
39S ribosomal protein L24, mitochondrial; Belongs to the universal ribosomal protein uL24 family.
   
 
 0.820
mrpl11
39S ribosomal protein L11, mitochondrial; Belongs to the universal ribosomal protein uL11 family.
    
 
 0.818
LOC108273989
Cytochrome c oxidase assembly protein COX11, mitochondrial.
      
 0.812
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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