Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mdkMidkine. (146 aa)    
Predicted Functional Partners:
LOC108270425
Tyrosine-protein kinase receptor.
    
 0.735
ltk
Tyrosine-protein kinase receptor.
    
 0.734
LOC108268159
Cytohesin-2.
      
 0.664
LOC108276453
Cytohesin-2-like.
      
 0.664
LOC108273324
Cytohesin-2-like.
      
 0.664
LOC108274176
Cytohesin-1 isoform X1.
      
 0.625
LOC108264572
Histone H1.0.
    
 
 0.611
cyth3
Cytohesin-3 isoform X1.
      
 0.611
LOC108258062
Cytohesin-3-like isoform X1.
      
 0.611
aldoc
Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.
      
 0.571
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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