Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC108280379Transcription cofactor HES-6-like isoform X2. (192 aa)    
Predicted Functional Partners:
LOC108271532
Recombining binding protein suppressor of hairless-like protein isoform X2.
    
 0.677
rbpj
Recombining binding protein suppressor of hairless.
    
 0.677
LOC108260898
Recombining binding protein suppressor of hairless-like.
    
 0.677
LOC108262746
Interferon alpha-inducible protein 27-like protein 2A.
      
 0.675
fancc
Fanconi anemia group C protein.
    
   0.626
fancg
Fanconi anemia group G protein isoform X1.
    
   0.626
fancf
Fanconi anemia group F protein.
    
   0.626
fancl
E3 ubiquitin-protein ligase FANCL isoform X1.
    
   0.626
LOC108274588
Achaete-scute homolog 1b-like.
   
 0.616
LOC108259333
Achaete-scute homolog 1b-like.
   
 0.616
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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