Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
pdcd6Programmed cell death protein 6 isoform X1. (183 aa)    
Predicted Functional Partners:
pdcd6ip
Programmed cell death 6-interacting protein isoform X2.
    
 
 0.887
sec31a
Protein transport protein Sec31A isoform X1.
    
 
 0.855
caprin1
Caprin-1 isoform X2.
      
 0.664
LOC108257006
Heme-binding protein 2-like.
    
   0.663
LOC108257783
Heme-binding protein 2-like.
    
   0.663
gfral
GDNF family receptor alpha-like isoform X4.
      
 0.648
sec13
Protein SEC13 homolog; Belongs to the WD repeat SEC13 family.
    
 
 0.620
sec23ip
SEC23-interacting protein isoform X1.
    
 
 0.610
LOC108276773
Phospholipase DDHD2-like isoform X1.
    
 
 0.610
LOC108258805
Heme-binding protein 2-like.
    
   0.585
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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