Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sparcSPARC isoform X1. (331 aa)    
Predicted Functional Partners:
LOC108279748
Lumican-like.
   
 
 0.887
dcn
Decorin; May affect the rate of fibrils formation.
   
 
 0.754
otol1
Otolin-1.
   
 0.753
OTOP1
Otopetrin-1.
      
 0.713
stab1
Stabilin-1.
     
 0.712
stab2
Stabilin-2 isoform X2.
     
 0.712
LOC108279263
Collagen alpha-1(I) chain-like isoform X1.
   
 0.699
opn3
Opsin-3.
      
 0.692
LOC108278262
Serpin H1-like; Belongs to the serpin family.
   
 
 0.690
LOC108277285
Serpin peptidase inhibitor clade H member 1a; Belongs to the serpin family.
   
 
 0.690
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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