Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rbm12bRNA-binding protein 12B. (654 aa)    
Predicted Functional Partners:
ylpm1
YLP motif-containing protein 1 isoform X2.
   
  
 0.606
LOC108280665
WW domain-containing adapter protein with coiled-coil-like isoform X1.
    
   0.587
wac
WW domain-containing adapter protein with coiled-coil isoform X2.
    
   0.587
pwwp2b
PWWP domain-containing protein 2B.
      
 0.577
asb12
Ankyrin repeat and SOCS box protein 12 isoform X2.
    
 
 0.560
arhgef25
Rho guanine nucleotide exchange factor 25 isoform X2.
      
 0.502
rlim
E3 ubiquitin-protein ligase RLIM.
      
 0.483
dazap1
DAZ-associated protein 1 isoform X1.
   
 
 0.460
ENSIPUP00000002593
Adenosine kinase b.
    
   0.456
adk
Adenosine kinase isoform X1.
    
   0.456
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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