LOC108273913 protein (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC108273913

Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family. (781 aa)

Predicted Functional Partners:

cs

0.999

idh3a

0.999

idh2

0.996

LOC108268871

0.996

mdh2

0.996

idh1

0.996

atp5f1a

0.990

idh3b

0.990

LOC108275983

0.990

LOC108276129

0.990

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108268871	LOC108273913	ENSIPUP00000026166	ENSIPUP00000001639	Malate synthase-like.	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	0.996
LOC108268871	LOC108275983	ENSIPUP00000026166	ENSIPUP00000019285	Malate synthase-like.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.762
LOC108268871	LOC108276129	ENSIPUP00000026166	ENSIPUP00000029009	Malate synthase-like.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.762
LOC108268871	cs	ENSIPUP00000026166	ENSIPUP00000027118	Malate synthase-like.	Citrate synthase; Belongs to the citrate synthase family.	0.998
LOC108268871	idh1	ENSIPUP00000026166	ENSIPUP00000035394	Malate synthase-like.	Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.	0.905
LOC108268871	idh2	ENSIPUP00000026166	ENSIPUP00000000533	Malate synthase-like.	Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.	0.905
LOC108268871	idh3a	ENSIPUP00000026166	ENSIPUP00000032044	Malate synthase-like.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.874
LOC108268871	idh3b	ENSIPUP00000026166	ENSIPUP00000008961	Malate synthase-like.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.762
LOC108268871	mdh2	ENSIPUP00000026166	ENSIPUP00000027200	Malate synthase-like.	Malate dehydrogenase.	0.995
LOC108273913	LOC108268871	ENSIPUP00000001639	ENSIPUP00000026166	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	Malate synthase-like.	0.996
LOC108273913	LOC108275983	ENSIPUP00000001639	ENSIPUP00000019285	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.990
LOC108273913	LOC108276129	ENSIPUP00000001639	ENSIPUP00000029009	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.990
LOC108273913	atp5f1a	ENSIPUP00000001639	ENSIPUP00000008049	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.990
LOC108273913	cs	ENSIPUP00000001639	ENSIPUP00000027118	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	Citrate synthase; Belongs to the citrate synthase family.	0.999
LOC108273913	idh1	ENSIPUP00000001639	ENSIPUP00000035394	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.	0.996
LOC108273913	idh2	ENSIPUP00000001639	ENSIPUP00000000533	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.	0.996
LOC108273913	idh3a	ENSIPUP00000001639	ENSIPUP00000032044	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.999
LOC108273913	idh3b	ENSIPUP00000001639	ENSIPUP00000008961	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.990
LOC108273913	mdh2	ENSIPUP00000001639	ENSIPUP00000027200	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	Malate dehydrogenase.	0.996
LOC108275983	LOC108268871	ENSIPUP00000019285	ENSIPUP00000026166	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	Malate synthase-like.	0.762