Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108272785Procollagen C-endopeptidase enhancer 2-like isoform X2. (467 aa)    
Predicted Functional Partners:
tll1
Metalloendopeptidase.
   
 0.712
bmp1
Metalloendopeptidase.
   
 0.712
LOC108276587
Metalloendopeptidase.
   
 0.712
amn
Protein amnionless.
   
 0.705
col22a1
Collagen alpha-1(XXII) chain.
    
 0.684
LOC108257304
Collagen triple helix repeat-containing protein 1-like.
     
 0.656
LOC108266478
Collagen alpha-2(V) chain-like.
   
 0.595
ENSIPUP00000016033
GC vitamin D binding protein.
    
 0.554
LOC108256451
Collagen triple helix repeat-containing protein 1-like.
     
 0.520
igfbp7
Insulin-like growth factor-binding protein 7.
   
  
 0.483
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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