Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
eappE2F-associated phosphoprotein. (313 aa)    
Predicted Functional Partners:
tssc4
Protein TSSC4.
    
 
 0.977
aar2
Protein AAR2 homolog.
    
 
 0.976
prpf8
pre-mRNA-processing-splicing factor 8.
    
 
 0.971
cd2bp2
CD2 antigen cytoplasmic tail-binding protein 2 isoform X1.
    
 
 0.968
eftud2
116 kDa U5 small nuclear ribonucleoprotein component.
    
 
 0.967
prpf6
pre-mRNA-processing factor 6.
    
 
 0.966
gpatch1
G patch domain-containing protein 1 isoform X2.
    
   0.964
ecd
Protein ecdysoneless homolog isoform X1.
    
   0.964
dhx35
Probable ATP-dependent RNA helicase DHX35.
   
   0.964
ddx23
Putative ATP-dependent RNA helicase DDX23.
    
   0.961
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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