Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108258667Homeobox protein unc-4 homolog. (156 aa)    
Predicted Functional Partners:
LOC108255424
Homeobox protein orthopedia B isoform X1.
   
  
 0.702
OTP
Homeobox protein orthopedia.
   
  
 0.702
foxp4
Forkhead box protein P4 isoform X1.
      
 0.628
arx
Aristaless-related homeobox protein.
   
    0.592
LOC108278624
Homeobox protein ARX-like isoform X1.
   
    0.592
LOC108266093
Thioredoxin domain-containing protein 3 homolog; Belongs to the NDK family.
    
   0.532
tbx20
T-box transcription factor TBX20.
    
 0.489
LOC108278262
Serpin H1-like; Belongs to the serpin family.
    
 
 0.484
LOC108256151
Prospero homeobox protein 1-like.
      
 0.483
prox1
Prospero homeobox protein 1 isoform X2.
      
 0.483
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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