Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC108258665Ubinuclein-2-like isoform X2. (266 aa)    
Predicted Functional Partners:
cabin1
Calcineurin-binding protein cabin-1 isoform X2.
   
 0.999
LOC108255820
Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.
    
 0.998
as1lb
Histone Chaperone asf1-b.
    
 0.957
asf1b
Histone chaperone ASF1B.
    
 0.957
rbm33
LOW QUALITY PROTEIN: RNA-binding protein 33.
   
  
 0.703
ergic2
Endoplasmic reticulum-Golgi intermediate compartment protein 2.
      
 0.689
atrx
Transcriptional regulator ATRX isoform X2.
     
 0.679
daxx
Death domain-associated protein 6 isoform X1.
      
 0.664
wtap
pre-mRNA-splicing regulator WTAP isoform X1.
      
 0.628
polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.610
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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