Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100305065E2A-1 transcription factor. (667 aa)    
Predicted Functional Partners:
tal1
T-cell acute lymphocytic leukemia protein 1.
    
 0.847
myod1
Myogenic factor.
    
 0.780
myf5
Myogenic factor.
    
 0.780
myog
Myogenin.
    
 0.743
tcf21
Transcription factor 21.
    
 0.733
LOC108274588
Achaete-scute homolog 1b-like.
   
 0.701
LOC108259333
Achaete-scute homolog 1b-like.
   
 0.701
ascl1
Achaete-scute homolog 1.
   
 0.701
id3
DNA-binding protein inhibitor ID-3-A.
    
 
 0.694
ASCL4
Achaete-scute homolog 4-like.
    
 0.671
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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