Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gpr27Probable G-protein coupled receptor 27. (374 aa)    
Predicted Functional Partners:
LOC108267152
Probable G-protein coupled receptor 25; Belongs to the G-protein coupled receptor 1 family.
     
 0.490
gpr160
Probable G-protein coupled receptor 160.
      
 0.480
smim20
Small integral membrane protein 20.
      
 0.473
GPR83
Probable G-protein coupled receptor 83.
     
 0.428
zic3
Zinc finger protein ZIC 3 isoform X1.
  
 
 0.424
ripk4
Receptor-interacting Serine/threonine-protein kinase 4.
    
 0.417
zic1
Zinc finger protein ZIC 1.
  
 
 0.415
shq1
Protein SHQ1 homolog.
      
 0.412
LOC108262465
Regulator of G-protein signaling 17-like isoform X1.
   
 
 0.406
LOC108271678
Regulator of G-protein signaling 8-like.
     
 0.402
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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