Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
stmn2Stathmin; Belongs to the stathmin family. (185 aa)    
Predicted Functional Partners:
ube2c
Ubiquitin-conjugating enzyme E2 C; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.582
nell2
Protein kinase C-binding protein NELL2.
   
 0.529
LOC108259544
Protein S100-B-like; Belongs to the S-100 family.
   
 0.494
ubqln4
Ubiquilin-4.
    
 0.476
psma4
Proteasome subunit alpha type.
    
 0.471
LOC108275024
F-box/WD repeat-containing protein 11-like isoform X1.
    
 0.461
LOC108277126
F-box/WD repeat-containing protein 11 isoform X1.
    
 0.461
pgam1
Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
    
 0.454
LOC108258456
Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
    
 0.454
rps15
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
    
 
 0.452
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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