Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108267207Tumor necrosis factor receptor superfamily member 16-like. (462 aa)    
Predicted Functional Partners:
ngf
Beta-nerve growth factor; Belongs to the NGF-beta family.
     
 0.949
ngfr
Tumor necrosis factor receptor superfamily member 16 isoform X1.
  
 
 
0.927
LOC108273578
Tumor necrosis factor receptor superfamily member 16-like.
  
  
 
0.908
LOC108276493
Neurotrophin-7-like; Belongs to the NGF-beta family.
     
 0.907
bdnf
Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.
     
 0.739
ntf3
Neurotrophin-3; Seems to promote the survival of visceral and proprioceptive sensory neurons; Belongs to the NGF-beta family.
     
 0.730
LOC108254910
ephrin-A3-like isoform X2; Belongs to the ephrin family.
     
 0.689
LOC108272373
ephrin-A3-like; Belongs to the ephrin family.
     
 0.689
LOC108269829
ephrin-A1-like; Belongs to the ephrin family.
     
 0.688
LOC108273217
ephrin-A1-like isoform X2; Belongs to the ephrin family.
     
 0.688
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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