Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phf5aPHD finger-like domain-containing protein 5A. (110 aa)    
Predicted Functional Partners:
sf3b4
Splicing factor 3B subunit 4.
   
 0.999
sf3b1
Splicing factor 3B subunit 1 isoform X1.
   
 0.999
sf3b5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.999
sf3b3
Splicing factor 3B subunit 3.
   
 0.999
sf3b6
Splicing factor 3B subunit 6.
   
 0.999
sf3b2
Splicing factor 3B subunit 2.
    
 0.998
snrpa1
U2 small nuclear ribonucleoprotein A.
   
 0.998
snrpg
Small nuclear ribonucleoprotein G.
   
 0.996
sf3a3
Splicing factor 3A subunit 3.
   
 0.996
ddx42
ATP-dependent RNA helicase DDX42.
    
 0.996
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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