Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108272260RING1 and YY1-binding protein B-like isoform X1. (255 aa)    
Predicted Functional Partners:
LOC108257787
Transcription factor E2F6-like isoform X2.
   
 0.935
rnf2
E3 ubiquitin-protein ligase RING2.
    
 0.933
auts2
Autism susceptibility gene 2 protein isoform X3.
    
 0.894
pcgf3
Polycomb group RING finger protein 3 isoform X1.
    
 0.882
pcgf6
Polycomb group RING finger protein 6 isoform X1.
    
 0.882
pcgf1
Polycomb group RING finger protein 1 isoform X1.
    
 0.877
fbrs
Probable fibrosin-1 isoform X5.
    
 0.873
l3mbtl2
Lethal(3)malignant brain tumor-like protein 2.
    
 0.862
LOC108280883
Polycomb complex protein BMI-1-B-like.
    
 0.862
bmi1
Polycomb complex protein BMI-1.
    
 0.856
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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