Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
creb3l1Cyclic AMP-responsive element-binding protein 3-like protein 1. (531 aa)    
Predicted Functional Partners:
LOC108269046
cAMP-responsive element modulator-like isoform X2.
    
 0.950
LOC108279325
POU domain protein.
      
 0.923
nkx1-1
NK1 transcription factor-related protein 1.
      
 0.923
LOC108270373
Ribosomal protein S6 kinase.
    
  0.902
mbtps2
Membrane-bound transcription factor site-2 protease.
    
 0.881
lcat
Phosphatidylcholine-sterol acyltransferase isoform X1.
      
 0.842
lrrc17
Leucine-rich repeat-containing protein 17.
      
 0.833
LOC108273944
Histone acetyltransferase p300-like isoform X6.
    
 0.828
LOC108259383
CREB-binding protein-like isoform X3.
    
 0.828
LOC108279275
CREB-binding protein-like isoform X2.
    
 0.828
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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