Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bcar3Breast cancer anti-estrogen resistance protein 3 isoform X2. (891 aa)    
Predicted Functional Partners:
bcar1
Breast cancer anti-estrogen resistance protein 1 isoform X4.
    
 0.590
nedd9
Enhancer of filamentation 1 isoform X1.
    
 0.590
tulp4
Tubby-related protein 4; Belongs to the TUB family.
     
 0.561
cass4
Cas scaffolding protein family member 4.
    
 0.560
LOC108267924
Embryonal Fyn-associated substrate-like isoform X1.
    
 0.519
tmem116
Transmembrane protein 116 isoform X1.
    
 
 0.489
spsb1
SPRY domain-containing SOCS box protein 1.
     
 0.426
LOC108266093
Thioredoxin domain-containing protein 3 homolog; Belongs to the NDK family.
   
 0.410
dnajc2
dnaJ homolog subfamily C member 2.
   
 0.405
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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