Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC108273914Thyrotroph embryonic factor-like isoform X1. (310 aa)    
Predicted Functional Partners:
dbp
D site-binding protein isoform X1.
   
   0.813
eya3
Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family.
   
 
 0.676
ENSIPUP00000019882
Cytochrome c oxidase subunit 7C.
   
 0.664
LOC108273061
Nuclear receptor subfamily 1 group D member 2-like.
   
 0.660
LOC108256654
Nuclear receptor subfamily 1 group D member 2-like isoform X1.
   
 0.660
nr1d1
Nuclear receptor subfamily 1 group D member 1 isoform X1.
   
 
 0.640
LOC108264777
Cytochrome C oxidase subunit 5A, mitochondrial.
   
 0.629
LOC108275329
Cytochrome c oxidase subunit 5A, mitochondrial-like.
   
 0.629
LOC108264941
Cytochrome c oxidase subunit 6A, mitochondrial.
   
 0.615
LOC108280912
Cytochrome c oxidase subunit 6A, mitochondrial.
   
 0.615
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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