Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mrpl5539S ribosomal protein L55, mitochondrial. (132 aa)    
Predicted Functional Partners:
mrpl41
39S ribosomal protein L41, mitochondrial.
   
 0.995
mrpl10
39S ribosomal protein L10, mitochondrial.
   
 0.994
mrpl46
39S ribosomal protein L46, mitochondrial isoform X1.
   
 0.994
mrpl52
39S ribosomal protein L52, mitochondrial isoform X2.
   
 
 0.988
mrpl51
39S ribosomal protein L51, mitochondrial.
   
 
 0.987
mrpl47
39S ribosomal protein L47, mitochondrial.
   
 0.985
mrps30
28S ribosomal protein S30, mitochondrial.
   
 
 0.984
mrpl42
39S ribosomal protein L42, mitochondrial isoform X2.
   
 0.982
mrpl28
39S ribosomal protein L28, mitochondrial isoform X2.
   
  0.982
mrpl2
39S ribosomal protein L2, mitochondrial.
   
  0.980
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.