Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC108262503Protein mago nashi homolog. (70 aa)    
Predicted Functional Partners:
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.984
eif4a3
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
   
 0.975
sap18
Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.
   
 0.957
casc3
Protein CASC3.
    
 0.956
alyref
THO complex subunit 4 isoform X2.
   
 0.943
rnps1
RNA-binding protein with serine-rich domain 1.
   
 0.942
upf2
Regulator of nonsense transcripts 2 isoform X2.
    
 0.937
pnn
Pinin.
   
 0.933
upf1
Regulator of nonsense transcripts 1.
   
 0.926
srsf3
Serine/arginine-rich splicing factor 3.
   
 0.921
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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