Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pamPeptidyl-glycine alpha-amidating monooxygenase isoform X1. (1001 aa)    
Predicted Functional Partners:
IAPP
Islet amyloid polypeptide.
      
 0.752
uhmk1
Serine/threonine-protein kinase Kist.
    
 
 0.723
rassf9
Ras association domain-containing protein 9.
    
 
 0.710
RASSF10-2
Ras association domain-containing protein 10-like.
    
 
 0.710
LOC108257034
Cytochrome b561.
      
 0.694
tor2a
Prosalusin.
      
 0.669
cpe
Carboxypeptidase E.
   
  
 0.653
bet1
BET1 homolog.
      
 0.615
scg5
Neuroendocrine protein 7B2.
   
  
 0.601
LOC108255065
Endothelin-converting enzyme 1-like.
   
  
 0.560
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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