slc5a9 protein (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

slc5a9

Sodium/glucose cotransporter 4; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (657 aa)

Predicted Functional Partners:

LOC108274193

0.653

bcam

0.628

slc25a10

0.628

LOC108271728

0.557

ftcd

0.473

aldh18a1

0.433

slc5a12

0.409

slc13a3

0.405

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108271728	LOC108274193	ENSIPUP00000026115	ENSIPUP00000022232	Solute carrier family 2, facilitated glucose transporter member 11-like isoform X1; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	Probable low-specificity L-threonine aldolase 2.	0.639
LOC108271728	ftcd	ENSIPUP00000026115	ENSIPUP00000012774	Solute carrier family 2, facilitated glucose transporter member 11-like isoform X1; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	Formimidoyltransferase-cyclodeaminase.	0.501
LOC108271728	slc25a10	ENSIPUP00000026115	ENSIPUP00000014526	Solute carrier family 2, facilitated glucose transporter member 11-like isoform X1; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	Mitochondrial dicarboxylate carrier; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.638
LOC108271728	slc5a9	ENSIPUP00000026115	ENSIPUP00000001807	Solute carrier family 2, facilitated glucose transporter member 11-like isoform X1; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	Sodium/glucose cotransporter 4; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.557
LOC108274193	LOC108271728	ENSIPUP00000022232	ENSIPUP00000026115	Probable low-specificity L-threonine aldolase 2.	Solute carrier family 2, facilitated glucose transporter member 11-like isoform X1; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.639
LOC108274193	aldh18a1	ENSIPUP00000022232	ENSIPUP00000023951	Probable low-specificity L-threonine aldolase 2.	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	0.677
LOC108274193	ftcd	ENSIPUP00000022232	ENSIPUP00000012774	Probable low-specificity L-threonine aldolase 2.	Formimidoyltransferase-cyclodeaminase.	0.644
LOC108274193	slc25a10	ENSIPUP00000022232	ENSIPUP00000014526	Probable low-specificity L-threonine aldolase 2.	Mitochondrial dicarboxylate carrier; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.706
LOC108274193	slc5a9	ENSIPUP00000022232	ENSIPUP00000001807	Probable low-specificity L-threonine aldolase 2.	Sodium/glucose cotransporter 4; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.653
aldh18a1	LOC108274193	ENSIPUP00000023951	ENSIPUP00000022232	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Probable low-specificity L-threonine aldolase 2.	0.677
aldh18a1	slc5a12	ENSIPUP00000023951	ENSIPUP00000033405	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Sodium-coupled monocarboxylate transporter 2 isoform X1; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.433
aldh18a1	slc5a9	ENSIPUP00000023951	ENSIPUP00000001807	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Sodium/glucose cotransporter 4; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.433
bcam	slc5a9	ENSIPUP00000004092	ENSIPUP00000001807	Basal cell adhesion molecule isoform X2.	Sodium/glucose cotransporter 4; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.628
ftcd	LOC108271728	ENSIPUP00000012774	ENSIPUP00000026115	Formimidoyltransferase-cyclodeaminase.	Solute carrier family 2, facilitated glucose transporter member 11-like isoform X1; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.501
ftcd	LOC108274193	ENSIPUP00000012774	ENSIPUP00000022232	Formimidoyltransferase-cyclodeaminase.	Probable low-specificity L-threonine aldolase 2.	0.644
ftcd	slc25a10	ENSIPUP00000012774	ENSIPUP00000014526	Formimidoyltransferase-cyclodeaminase.	Mitochondrial dicarboxylate carrier; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.628
ftcd	slc5a9	ENSIPUP00000012774	ENSIPUP00000001807	Formimidoyltransferase-cyclodeaminase.	Sodium/glucose cotransporter 4; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.473
slc13a3	slc5a12	ENSIPUP00000008567	ENSIPUP00000033405	Solute carrier family 13 member 3.	Sodium-coupled monocarboxylate transporter 2 isoform X1; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.410
slc13a3	slc5a9	ENSIPUP00000008567	ENSIPUP00000001807	Solute carrier family 13 member 3.	Sodium/glucose cotransporter 4; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.405
slc25a10	LOC108271728	ENSIPUP00000014526	ENSIPUP00000026115	Mitochondrial dicarboxylate carrier; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Solute carrier family 2, facilitated glucose transporter member 11-like isoform X1; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.638