Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dnttip2Deoxynucleotidyltransferase terminal-interacting protein 2. (908 aa)    
Predicted Functional Partners:
utp11
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
 
 0.988
fcf1
rRNA-processing protein fcf1-like protein.
   
 
 0.987
mphosph10
U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.
   
 
 0.987
utp3
Something about silencing protein 10.
   
 
 0.984
utp6
U3 small nucleolar RNA-associated protein 6 homolog.
   
 
 0.979
ngdn
Neuroguidin.
   
 
 0.978
LOC108260138
U3 small nucleolar RNA-associated protein 14 homolog A-like.
   
 
 0.974
wdr46
WD repeat-containing protein 46.
   
 
 0.972
imp4
U3 small nucleolar ribonucleoprotein protein IMP4.
   
 
 0.971
rsl1d1
Ribosomal L1 domain-containing protein 1.
   
 
 0.966
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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