Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
thoc3THO complex subunit 3. (340 aa)    
Predicted Functional Partners:
thoc1
LOW QUALITY PROTEIN: THO complex subunit 1.
    
 0.999
alyref
THO complex subunit 4 isoform X2.
   
 0.999
thoc5
THO complex subunit 5 homolog.
   
 0.999
thoc2
THO complex subunit 2 isoform X2.
    
 0.999
thoc7
Tho complex subunit 7-like protein.
   
 0.999
LOC108280484
THO complex subunit 6 homolog isoform X1.
   
 0.993
LOC108280493
THO complex subunit 6 homolog.
   
 0.987
sarnp
SAP domain-containing ribonucleoprotein.
    
 0.958
zc3h13
Zinc finger CCCH domain-containing protein 13 isoform X1.
    
 0.933
LOC108272881
Spliceosome RNA helicase DDX39B isoform X1.
    
 0.928
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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