Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
iws1Interacts with SUPT6H, CTD assembly factor 1. (622 aa)    
Predicted Functional Partners:
supt6h
Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.
   
 0.998
ctdp1
RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.
   
 
 0.964
aff4
AF4/FMR2 family member 4 isoform X1.
     
 0.963
leo1
RNA polymerase-associated protein LEO1.
   
 0.960
eaf1
ELL-associated factor 1.
   
 
  0.959
supt5h
Transcription elongation factor SPT5.
   
 0.959
polr2c
DNA-directed RNA polymerase II subunit RPB3 isoform X1.
    
 0.957
supt16h
FACT complex subunit SPT16.
   
 0.957
ctr9
RNA polymerase-associated protein CTR9 homolog.
   
 0.954
setd2
Histone-lysine N-methyltransferase SETD2.
   
 
 0.953
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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