Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSIPUP00000001836annotation not available (151 aa)    
Predicted Functional Partners:
LOC108259851
Cdc42 effector protein 2-like.
   
 
 0.859
cdc42ep3
CDC42 effector protein 3.
     
 0.817
cdc42
Cell division control protein 42-like protein.
    
 0.770
LOC108272678
Cell division control protein 42 homolog.
    
 0.770
LOC108276251
Cell division control protein 42 homolog.
    
 0.770
leng8
Leukocyte receptor cluster member 8.
      
 0.754
ttc13
Tetratricopeptide repeat protein 13 isoform X1.
      
 0.694
ndufa3
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3.
      
 0.646
ttll10
Inactive polyglycylase TTLL10.
      
 0.554
shisa2
Protein shisa-2 homolog.
      
 0.551
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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