Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spata6Spermatogenesis-associated protein 6. (470 aa)    
Predicted Functional Partners:
spata20
Spermatogenesis-associated protein 20 isoform X1.
      
 0.810
rsph1
Radial spoke head 1-like protein.
   
  
 0.800
cntln
Centlein.
      
 0.774
cfap52
Cilia- and flagella-associated protein 52.
   
  
 0.736
spata17
Spermatogenesis-associated protein 17 isoform X1.
      
 0.733
pmfbp1
Polyamine-modulated factor 1-binding protein 1 isoform X1.
  
 
 
 0.728
spata7
Spermatogenesis-associated protein 7 isoform X1.
      
 0.727
LOC108266416
Fas apoptotic inhibitory molecule 1-like.
      
 0.678
cdkn2c
Cyclin-dependent kinase 4 inhibitor C.
      
 0.665
spata18
Mitochondria-eating protein.
   
  
 0.643
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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