Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108264300F-box only protein 36-like isoform X1. (195 aa)    
Predicted Functional Partners:
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.744
cul1
Cullin 1.
   
 0.471
LOC108280768
Cullin-1; Belongs to the cullin family.
   
 0.471
fbxo16
F-box only protein 16 isoform X1.
   
 
 0.454
rnf7
RING-box protein 2.
    
  0.449
LOC108279000
E3 ubiquitin-protein ligase RBX1-like.
    
  0.449
rbx1
E3 ubiquitin-protein ligase RBX1.
    
  0.449
LOC108275473
F-box only protein 41-like isoform X3.
   
 
 0.434
LOC108260496
F-box only protein 41-like.
   
 
 0.434
nedd8
NEDD8.
    
  0.427
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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