Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tprNucleoprotein TPR isoform X1. (2335 aa)    
Predicted Functional Partners:
nup153
Nuclear pore complex protein Nup153 isoform X1.
   
 0.969
nup98
Nuclear pore complex protein Nup98-Nup96 isoform X1.
   
 0.942
nup205
Nuclear pore complex protein Nup205.
   
 0.928
nup93
Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.
   
 0.927
nup85
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.912
seh1l
LOW QUALITY PROTEIN: nucleoporin SEH1; Belongs to the WD repeat SEC13 family.
    
 0.911
nup133
Nuclear pore complex protein Nup133.
   
 0.909
rae1
mRNA export factor isoform X1.
    
 0.905
LOC108257839
Nucleoprotein TPR-like isoform X1.
  
  
 
0.903
nup214
Nuclear pore complex protein Nup214 isoform X1.
   
 0.900
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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