Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
znf704Zinc finger protein 704 isoform X1. (476 aa)    
Predicted Functional Partners:
suds3
LOW QUALITY PROTEIN: sin3 histone deacetylase corepressor complex component SDS3.
    
   0.733
brms1l
Breast cancer metastasis-suppressor 1-like protein isoform X1.
    
   0.673
sap30l
Histone deacetylase complex subunit SAP30L.
    
 
 0.631
mlc1
Membrane protein MLC1 isoform X1.
      
 0.615
LOC108268191
Breast cancer metastasis-suppressor 1-like protein-A.
    
   0.612
LOC108271984
Histone deacetylase complex subunit SAP130-like isoform X1.
    
   0.584
LOC108278110
Histone deacetylase complex subunit SAP130-like isoform X1.
    
   0.584
arid4b
AT-rich interactive domain-containing protein 4B isoform X2.
    
   0.558
sin3a
Paired amphipathic helix protein Sin3a isoform X2.
  
 
   0.555
mdn1
Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.
    
 
 0.549
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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