Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
agbl4Cytosolic carboxypeptidase 6. (222 aa)    
Predicted Functional Partners:
ENSIPUP00000001884
ATP/GTP binding protein-like 4.
 
      0.899
ttll4
Tubulin polyglutamylase TTLL4.
    
 
 0.657
etv6
Transcription factor ETV6 isoform X2.
      
 0.628
lratd1
Protein FAM84A.
      
 0.604
slc22a16
Solute carrier family 22 member 16.
      
 0.590
ttll5
Tubulin polyglutamylase TTLL5 isoform X1.
    
 
 0.533
sh3rf3
SH3 domain-containing RING finger protein 3.
      
 0.490
bend5
BEN domain-containing protein 5.
 
  
 0.478
LOC108280152
Apoptosis facilitator Bcl-2-like protein 14 isoform X1.
      
 0.471
LOC108263940
Apoptosis facilitator Bcl-2-like protein 14.
      
 0.471
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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