Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ccdc12Coiled-coil domain-containing protein 12. (165 aa)    
Predicted Functional Partners:
syf2
Pre-mRNA-splicing factor SYF2.
    
  0.997
cdc40
pre-mRNA-processing factor 17.
    
  0.996
ppil1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
  0.994
cwc22
pre-mRNA-splicing factor CWC22 homolog isoform X2.
    
  0.989
fam32a
Protein FAM32A.
   
 0.986
yju2
Coiled-coil domain-containing protein 94.
    
  0.985
slu7
pre-mRNA-splicing factor SLU7.
   
  0.984
cactin
Cactin.
   
  0.982
ppwd1
Peptidylprolyl isomerase domain and WD repeat-containing protein 1.
    
 0.982
tfip11
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.
    
  0.978
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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