Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108259270SPRY domain-containing SOCS box protein 3-like. (214 aa)    
Predicted Functional Partners:
cul5
Cullin-5 isoform X1; Belongs to the cullin family.
    
 0.755
ankrd29
Ankyrin repeat domain-containing protein 29.
     
 0.734
eloc
Transcription elongation factor B polypeptide 1 isoform X1; Belongs to the SKP1 family.
    
 0.726
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.709
klhl38
Kelch-like protein 38 isoform X1.
     
 0.696
mycbp2
E3 ubiquitin-protein ligase MYCBP2 isoform X10.
    
 
 0.696
LOC108272409
Kelch-like protein 38.
     
 0.666
LOC108265939
Elongation of very long chain fatty acids protein.
      
 0.604
LOC108263466
Uncharacterized protein LOC108263466 isoform X1.
      
 0.581
fbxo32
F-box only protein 32.
     
 0.560
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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