Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bend5BEN domain-containing protein 5. (409 aa)    
Predicted Functional Partners:
ENSIPUP00000001884
ATP/GTP binding protein-like 4.
 
  
 0.692
bend4
BEN domain-containing protein 4 isoform X1.
      
 0.554
faf1
FAS-associated factor 1.
      
 0.485
agbl4
Cytosolic carboxypeptidase 6.
 
  
 0.478
LOC108273677
Uncharacterized protein LOC108273677 isoform X2.
      
 0.478
bend3
BEN domain-containing protein 3 isoform X1.
    
 
 0.474
LOC108263846
DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands.
     
 0.440
LOC108266093
Thioredoxin domain-containing protein 3 homolog; Belongs to the NDK family.
    
 0.428
mysm1
Histone H2A deubiquitinase MYSM1.
    
  0.426
LOC108259965
Bicaudal D-related protein 2-like.
    
 
 0.420
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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