Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC108271503Contactin-3-like isoform X2. (1026 aa)    
Predicted Functional Partners:
ptprg
Receptor-type tyrosine-protein phosphatase gamma isoform X1.
    
 0.647
chl1
Neural cell adhesion molecule L1-like protein isoform X1.
   
 0.585
LOC108276120
Neural cell adhesion molecule L1-like protein.
   
 0.585
l1cam
Neural cell adhesion molecule L1 isoform X1.
   
 0.585
nrcam
Neuronal cell adhesion molecule isoform X1.
   
 0.585
LOC108275777
Neural cell adhesion molecule L1.1-like isoform X1.
   
 0.585
nfasc
Neurofascin isoform X1.
   
 0.585
LOC108272134
Receptor-type tyrosine-protein phosphatase gamma-like isoform X1.
    
 0.560
LOC108276480
Neurofascin-like isoform X1.
   
 0.550
LOC108266700
Contactin-associated protein-like 5 isoform X1.
   
 0.520
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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