Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSIPUP00000001889annotation not available (180 aa)    
Predicted Functional Partners:
nrxn3
Neurexin 3.
   
 0.829
LOC108279008
Neurexin-2-like.
   
 0.827
ENSIPUP00000023869
Neuroligin-3-like.
 
      0.715
LOC108274166
Neurexin-1a isoform X4.
   
 0.632
nrxn1
Neurexin-1 isoform X6.
   
 0.632
wdr43
WD repeat-containing protein 43.
   
 0.622
ENSIPUP00000016805
Neurexin-2-like.
   
 0.601
ENSIPUP00000016849
Neurexin 2b.
   
 0.601
utp4
U3 small nucleolar RNA-associated protein 4 homolog.
   
 0.582
DLG4
Disks large homolog 4-like; Belongs to the MAGUK family.
    
 0.577
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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