Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ENSIPUP00000001890Proteoglycan 4a. (350 aa)    
Predicted Functional Partners:
wap65-2
Warm temperature acclimation protein 65 KDa-2 isoform X2.
      
 0.550
LOC108256826
Neuropeptide F receptor-like isoform X1.
     
 0.531
LOC108257195
Neuropeptide F receptor-like isoform X2.
     
 0.531
serpina10
Protein Z-dependent protease inhibitor; Belongs to the serpin family.
   
  0.447
lrg1
Leucine-rich alpha-2-glycoprotein isoform X6.
   
 0.447
LOC108273316
XK-related protein.
      
 0.447
LOC108268788
Aggrecan core protein-like.
    
 0.402
LOC108259193
Aggrecan core protein-like isoform X1.
    
 0.402
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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